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37662e6918 Jean*0001 function [AA,itrs,MM] = rdmds(fnamearg,varargin)
3323410f65 Alis*0002 % RDMDS Read MITgcmUV meta/data files
a15d675b90 Alis*0003 %
00398243b4 Alis*0004 % A = RDMDS(FNAME)
0005 % A = RDMDS(FNAME,ITER)
0006 % A = RDMDS(FNAME,[ITER1 ITER2 ...])
52e6460920 Alis*0007 % A = RDMDS(FNAME,NaN)
0008 % A = RDMDS(FNAME,Inf)
e6cfd13877 Jean*0009 % [A,ITS,M] = RDMDS(FNAME,[...])
96629ec1c2 Alis*0010 % A = RDMDS(FNAME,[...],'rec',RECNUM)
00398243b4 Alis*0011 %
3323410f65 Alis*0012 % A = RDMDS(FNAME) reads data described by meta/data file format.
0013 % FNAME is a string containing the "head" of the file names.
e6cfd13877 Jean*0014 %
3323410f65 Alis*0015 % eg. To load the meta-data files
0016 % T.0000002880.000.000.meta, T.0000002880.000.000.data
0017 % T.0000002880.001.000.meta, T.0000002880.001.000.data
0018 % T.0000002880.002.000.meta, T.0000002880.002.000.data
0019 % T.0000002880.003.000.meta, T.0000002880.003.000.data
0020 % use
0021 % >> A=rdmds('T.0000002880');
0022 % >> size(A)
0023 % ans =
0024 % 64 32 5
0025 % eg. To load a multiple record file
0026 % >> A=rdmds('pickup.0000002880');
0027 % >> size(A)
0028 % ans =
0029 % 64 32 5 61
e6cfd13877 Jean*0030 %
0031 %
3323410f65 Alis*0032 % A = RDMDS(FNAME,ITER) reads data described by meta/data file format.
0033 % FNAME is a string containing the "head" of the file name excluding the
0034 % 10-digit iterartion number.
0035 % ITER is a vector of positive integers that will expand to the 10-digit
0036 % number in the file name.
52e6460920 Alis*0037 % If ITER=NaN, all iterations will be read.
0038 % If ITER=Inf, the last (highest) iteration will be read.
96629ec1c2 Alis*0039 %
3323410f65 Alis*0040 % eg. To repeat above operation
0041 % >> A=rdmds('T',2880);
0042 % eg. To read multiple time steps
0043 % >> A=rdmds('T',[0 1440 2880]);
52e6460920 Alis*0044 % eg. To read all time steps
0045 % >> [A,ITS]=rdmds('T',NaN);
0046 % eg. To read the last time step
0047 % >> [A,IT]=rdmds('T',Inf);
3323410f65 Alis*0048 % Note: this form can not read files with no iteration count in file name.
96629ec1c2 Alis*0049 %
0050 %
0051 % A = RDMDS(FNAME,[...],'rec',RECNUM) reads individual records from
0052 % multiple record files.
e6cfd13877 Jean*0053 %
96629ec1c2 Alis*0054 % eg. To read a single record from a multi-record file
0055 % >> [A,IT]=rdmds('pickup.ckptA',11);
0056 % eg. To read several records from a multi-record file
0057 % >> [A,IT]=rdmds('pickup',Inf,'rec',[1:5 8 12]);
0058 %
e6cfd13877 Jean*0059 %
3323410f65 Alis*0060 % A = RDMDS(FNAME,ITER,MACHINEFORMAT) allows the machine format to be
96629ec1c2 Alis*0061 % A = RDMDS(FNAME,MACHINEFORMAT)
3323410f65 Alis*0062 % specified which MACHINEFORMAT is on of the following strings:
0063 % 'n' 'l' 'b' 'd' 'g' 'c' 'a' 's' - see FOPEN for more details
96629ec1c2 Alis*0064 %
e6cfd13877 Jean*0065
52e6460920 Alis*0066 AA=[];
37662e6918 Jean*0067 itrs=[];
e6cfd13877 Jean*0068 MM=[];
a15d675b90 Alis*0069
0070 % Default options
0071 ieee='b';
00398243b4 Alis*0072 fname=fnamearg;
96629ec1c2 Alis*0073 userecords=0;
0074 recnum=[];
a15d675b90 Alis*0075
0076 % Check optional arguments
00398243b4 Alis*0077 for ind=1:size(varargin,2);
0078 arg=varargin{ind};
0079 if ischar(arg)
0080 if strcmp(arg,'n') | strcmp(arg,'native')
0081 ieee='n';
0082 elseif strcmp(arg,'l') | strcmp(arg,'ieee-le')
0083 ieee='l';
0084 elseif strcmp(arg,'b') | strcmp(arg,'ieee-be')
0085 ieee='b';
0086 elseif strcmp(arg,'c') | strcmp(arg,'cray')
0087 ieee='c';
0088 elseif strcmp(arg,'a') | strcmp(arg,'ieee-le.l64')
0089 ieee='a';
0090 elseif strcmp(arg,'s') | strcmp(arg,'ieee-be.l64')
0091 ieee='s';
96629ec1c2 Alis*0092 elseif strcmp(arg,'rec')
0093 userecords=1;
00398243b4 Alis*0094 else
0095 error(['Optional argument ' arg ' is unknown'])
0096 end
a15d675b90 Alis*0097 else
96629ec1c2 Alis*0098 if userecords==1
0099 recnum=arg;
37662e6918 Jean*0100 elseif isempty(itrs)
356a4fc521 Alis*0101 if isnan(arg)
37662e6918 Jean*0102 itrs=scanforfiles(fname);
0103 disp([ sprintf('Reading %i time levels:',size(itrs,2)) sprintf(' %i',itrs) ]);
29a315c92f Alis*0104 elseif isinf(arg)
37662e6918 Jean*0105 itrs=scanforfiles(fname);
0106 if isempty(itrs)
0107 AA=[];itrs=[];return;
2f1302ba5d Alis*0108 end
37662e6918 Jean*0109 disp([ sprintf('Found %i time levels, reading %i',size(itrs,2),itrs(end)) ]);
0110 itrs=itrs(end);
22586ff4d2 Alis*0111 % elseif prod(double(arg>=0)) & prod(double(round(arg)==arg))
60f503df53 Jean*0112 % elseif prod(arg>=0) & prod(round(arg)==arg)
0113 elseif min(arg)>=0 & isempty(find(round(arg)~=arg))
29a315c92f Alis*0114 if arg>=9999999999
0115 error(sprintf('Argument %i > 9999999999',arg))
0116 end
37662e6918 Jean*0117 itrs=arg;
aa4af8ca63 Jean*0118 elseif length(arg) == 1 & arg == -1
0119 itrs=arg;
00398243b4 Alis*0120 else
0121 error(sprintf('Argument %i must be a positive integer',arg))
0122 end
96629ec1c2 Alis*0123 else
0124 error('Multiple iterations should be specified as a vector')
0125 end
a15d675b90 Alis*0126 end
00398243b4 Alis*0127 end
0128
37662e6918 Jean*0129 if isempty(itrs)
0130 itrs=-1;
96629ec1c2 Alis*0131 end
0132
00398243b4 Alis*0133 % Loop over each iteration
37662e6918 Jean*0134 for iter=1:size(itrs,2);
0135 if itrs(iter)>=0
0136 fname=sprintf('%s.%10.10i',fnamearg,itrs(iter));
0137 end
a15d675b90 Alis*0138
bf3d93be62 Alis*0139 % Figure out if there is a path in the filename
37662e6918 Jean*0140 NS=findstr('/',fname);
0141 if size(NS)>0
0142 Dir=fname(1:NS(end));
0143 else
0144 Dir='./';
0145 end
bf3d93be62 Alis*0146
a15d675b90 Alis*0147 % Match name of all meta-files
aa4af8ca63 Jean*0148 %fprintf(' search for file "%s".*meta\n',fname);
0149 allfiles=dir( sprintf('%s.*meta',fname) );
a15d675b90 Alis*0150
37662e6918 Jean*0151 if size(allfiles,1)==0
aa4af8ca63 Jean*0152 disp(sprintf('No files match the search: %s.*meta',fname));
37662e6918 Jean*0153 %allow partial reads% error('No files found.')
0154 end
a15d675b90 Alis*0155
0156 % Loop through allfiles
37662e6918 Jean*0157 for j=1:size(allfiles,1);
aa4af8ca63 Jean*0158 %fprintf(' file # %3i : %s\n',j,allfiles(j).name);
a15d675b90 Alis*0159
0160 % Read meta- and data-file
37662e6918 Jean*0161 [A,N,M,mG] = localrdmds([Dir allfiles(j).name],ieee,recnum);
e6cfd13877 Jean*0162
0163 %- Merge local Meta file content (M) to MM string:
37662e6918 Jean*0164 if j > 0, %- to comment out this block: "if j < 0" (since j is always > 0)
0165 ii=findstr(M,' timeStepNumber');
0166 if isempty(ii), ii1=0; ii2=0;
0167 else ii1=ii; ii2=ii+min(findstr(M(1+ii:end),'];')); end
0168 ii=findstr(M,' timeInterval');
0169 if isempty(ii), jj1=0; jj2=0;
0170 else jj1=ii; jj2=ii+min(findstr(M(1+ii:end),'];')); end
0171 if iter==1 & j==1,
aa4af8ca63 Jean*0172 MM=M; ind1=0; ind2=0; is1=ii1; js1=jj1; M3='';
0173 if ii1*jj1 > 0,
37662e6918 Jean*0174 %ind1=min(ii1,jj1); ind2=max(ii2,jj2);
0175 %if ii1 < jj1, ii3=ii2+1; jj3=jj1-1;
0176 %else ii3=jj2+1; jj3=ii1-1; end
0177 order=sort([ii1 ii2 jj1 jj2]);
0178 ind1=order(1); ii3=order(2)+1; jj3=order(3)-1; ind2=order(4);
0179 M2=M(ii1:ii2); M4=M(jj1:jj2); M3=M(ii3:jj3);
aa4af8ca63 Jean*0180 elseif ii1 > 0,
37662e6918 Jean*0181 ind1=ii1; ind2=ii2;
0182 M2=M(ii1:ii2); M4='';
aa4af8ca63 Jean*0183 elseif jj1 > 0,
37662e6918 Jean*0184 ind1=jj1; ind2=jj2;
0185 M4=M(jj1:jj2); M2='';
0186 end
0187 M5=M(1+ind2:end);
0188 %fprintf(' ii1,ii2 = %i %i ; jj1,jj2= %i %i ;', ii1,ii2, jj1,jj2);
0189 %fprintf(' ii3,jj3= %i %i ; ind1,ind2= %i %i\n',ii3,jj3,ind1,ind2);
0190 %fprintf('M(1:ind1)=%s<\n',M(1:ind1));
0191 %fprintf(' M2=%s<\n',M2);
0192 %fprintf(' M3=%s<\n',M3);
0193 %fprintf(' M4=%s<\n',M4);
0194 %fprintf(' M5=%s<\n',M5);
0195 else
aa4af8ca63 Jean*0196 if ii1*jj1 > 0,
37662e6918 Jean*0197 order=sort([ii1 ii2 jj1 jj2]);
0198 ind=order(1); ii3=order(2)+1; jj3=order(3)-1; ind2=order(4);
0199 else ind=max(ii1,jj1); ind2=ii2+jj2; end
0200 compar=(ind == ind1); ii=0;
0201 if compar & ind1 == 0, ii=1; compar=strcmp (MM,M); end
0202 if compar & ind1 > 0, ii=2; compar=strncmp(MM,M,ind1) ; end
0203 if compar & ind1 > 0, ii=3; compar=strcmp(M5,M(1+ind2:end)); end
0204 if compar & ii1*jj1 > 0, ii=4; compar=strcmp(M3,M(ii3:jj3)); end
0205 if ~compar,
0206 fprintf('WARNING: Meta file (%s) is different (%i) from 1rst one:\n', ...
0207 allfiles(j).name,ii);
0208 fprintf(' it=%i :MM:%s\n',itrs(1),MM);
0209 fprintf(' it=%i :M :%s\n\n',itrs(iter),M);
0210 elseif ind1 > 0,
0211 if ii1 > 0,
0212 Mj=M(ii1:ii2); ii=findstr(Mj,'['); Mj=Mj(1+ii:end);
e6cfd13877 Jean*0213 % add it-number from Mj to M2 (if different):
37662e6918 Jean*0214 if isempty(findstr(M2,Mj)), M2=[deblank(M2(1:end-1)),Mj]; end
0215 end
0216 if jj1 > 0,
0217 Mj=M(jj1:jj2); ii=findstr(Mj,'['); Mj=Mj(1+ii:end);
0218 % add time interval from Mj to M4 (if different):
0219 if isempty(findstr(M4,Mj)), M4=[deblank(M4(1:end-1)),' ;',Mj]; end
0220 end
0221 end
0222 end
e6cfd13877 Jean*0223 % save modifications:
aa4af8ca63 Jean*0224 if ind1>0 & j==size(allfiles,1) & iter==size(itrs,2),
0225 if ii1 < jj1, MM=[MM(1:ind1-1),M2,M3,M4,M5];
0226 else MM=[MM(1:ind1-1),M4,M3,M2,M5]; end
37662e6918 Jean*0227 end
0228 end
a15d675b90 Alis*0229
e6cfd13877 Jean*0230 %- put local data file content in global array AA:
37662e6918 Jean*0231 bdims=N(1,:);
0232 r0=N(2,:);
0233 rN=N(3,:);
0234 ndims=prod(size(bdims));
0235 if j==1 & iter==1, AA=zeros([bdims size(itrs,2)]); end
0236 if mG(1)==0 & mG(2)==1,
0237 if (ndims == 1)
0238 AA(r0(1):rN(1),iter)=A;
0239 elseif (ndims == 2)
0240 AA(r0(1):rN(1),r0(2):rN(2),iter)=A;
0241 elseif (ndims == 3)
0242 AA(r0(1):rN(1),r0(2):rN(2),r0(3):rN(3),iter)=A;
0243 elseif (ndims == 4)
0244 AA(r0(1):rN(1),r0(2):rN(2),r0(3):rN(3),r0(4):rN(4),iter)=A;
0245 elseif (ndims == 5)
0246 AA(r0(1):rN(1),r0(2):rN(2),r0(3):rN(3),r0(4):rN(4),r0(5):rN(5),iter)=A;
0247 else
0248 error('Dimension of data set is larger than currently coded. Sorry!')
0249 end
0250 elseif (ndims == 1)
0251 AA(r0(1):rN(1),iter)=A;
128322677f Jean*0252 else
0253 %- to debug: do simple stransfert (with a loop on 2nd index);
0254 % will need to change this later, to improve efficiency:
37662e6918 Jean*0255 for i=0:rN(2)-r0(2),
0256 if (ndims == 2)
0257 AA(r0(1)+i*mG(1):rN(1)+i*mG(1),r0(2)+i*mG(2),iter)=A(:,1+i);
0258 elseif (ndims == 3)
0259 AA(r0(1)+i*mG(1):rN(1)+i*mG(1),r0(2)+i*mG(2), ...
128322677f Jean*0260 r0(3):rN(3),iter)=A(:,1+i,:);
37662e6918 Jean*0261 elseif (ndims == 4)
0262 AA(r0(1)+i*mG(1):rN(1)+i*mG(1),r0(2)+i*mG(2), ...
128322677f Jean*0263 r0(3):rN(3),r0(4):rN(4),iter)=A(:,1+i,:,:);
37662e6918 Jean*0264 elseif (ndims == 5)
0265 AA(r0(1)+i*mG(1):rN(1)+i*mG(1),r0(2)+i*mG(2), ...
128322677f Jean*0266 r0(3):rN(3),r0(4):rN(4),r0(5):rN(5),iter)=A(:,1+i,:,:,:);
37662e6918 Jean*0267 else
0268 error('Dimension of data set is larger than currently coded. Sorry!')
0269 end
0270 end
128322677f Jean*0271 end
a15d675b90 Alis*0272
37662e6918 Jean*0273 end % files
00398243b4 Alis*0274 end % iterations
a15d675b90 Alis*0275
0276 %-------------------------------------------------------------------------------
0277
128322677f Jean*0278 function [A,N,M,map2glob] = localrdmds(fname,ieee,recnum)
a15d675b90 Alis*0279
0280 mname=strrep(fname,' ','');
0281 dname=strrep(mname,'.meta','.data');
0282
128322677f Jean*0283 %- set default mapping from tile to global file:
0284 map2glob=[0 1];
0285
a15d675b90 Alis*0286 % Read and interpret Meta file
0287 fid = fopen(mname,'r');
0288 if (fid == -1)
0289 error(['File' mname ' could not be opened'])
0290 end
0291
0292 % Scan each line of the Meta file
0293 allstr=' ';
0294 keepgoing = 1;
0295 while keepgoing > 0,
0296 line = fgetl(fid);
0297 if (line == -1)
0298 keepgoing=-1;
0299 else
0300 % Strip out "(PID.TID *.*)" by finding first ")"
0301 %old ind=findstr([line ')'],')'); line=line(ind(1)+1:end);
0302 ind=findstr(line,')');
0303 if size(ind) ~= 0
0304 line=line(ind(1)+1:end);
0305 end
0306 % Remove comments of form //
fe3c47efa0 Jean*0307 line=[line,' //']; ind=findstr(line,'//'); line=line(1:ind(1)-1);
0308 % Add to total string (without starting & ending blanks)
0309 while line(1:1) == ' ', line=line(2:end); end
128322677f Jean*0310 if strncmp(line,'map2glob',8), eval(line);
0311 else allstr=[allstr,deblank(line),' '];
0312 end
a15d675b90 Alis*0313 end
0314 end
0315
0316 % Close meta file
0317 fclose(fid);
0318
0319 % Strip out comments of form /* ... */
0320 ind1=findstr(allstr,'/*'); ind2=findstr(allstr,'*/');
0321 if size(ind1) ~= size(ind2)
0322 error('The /* ... */ comments are not properly paired')
0323 end
0324 while size(ind1,2) > 0
fe3c47efa0 Jean*0325 allstr=[deblank(allstr(1:ind1(1)-1)) allstr(ind2(1)+2:end)];
0326 %allstr=[allstr(1:ind1(1)-1) allstr(ind2(1)+3:end)];
a15d675b90 Alis*0327 ind1=findstr(allstr,'/*'); ind2=findstr(allstr,'*/');
0328 end
0329
0330 % This is a kludge to catch whether the meta-file is of the
0331 % old or new type. nrecords does not exist in the old type.
52e6460920 Alis*0332 nrecords = NaN;
a15d675b90 Alis*0333
e6cfd13877 Jean*0334 %- store the full string for output:
0335 M=strrep(allstr,'format','dataprec');
0336
a15d675b90 Alis*0337 % Everything in lower case
0338 allstr=lower(allstr);
0339
0340 % Fix the unfortunate choice of 'format'
0341 allstr=strrep(allstr,'format','dataprec');
0342
0343 % Evaluate meta information
0344 eval(allstr);
0345
0346 N=reshape( dimlist , 3 , prod(size(dimlist))/3 );
e6cfd13877 Jean*0347 rep=[' dimList = [ ',sprintf('%i ',N(1,:)),']'];
96629ec1c2 Alis*0348 if ~isnan(nrecords) & nrecords > 1 & isempty(recnum)
3323410f65 Alis*0349 N=[N,[nrecords 1 nrecords]'];
96629ec1c2 Alis*0350 elseif ~isempty(recnum) & recnum>nrecords
0351 error('Requested record number is higher than the number of available records')
0352 end
0353
e6cfd13877 Jean*0354 %- make "dimList" shorter (& fit output array size) in output "M":
0355 pat=' dimList = \[(\s*\d+\,?)*\s*\]';
0356 M=regexprep(M,pat,rep);
0357 % and remove double space within sq.brakets:
0358 ind1=findstr(M,'['); ind2=findstr(M,']');
0359 if length(ind1) == length(ind2),
0360 for i=length(ind1):-1:1, if ind1(i) < ind2(i),
0361 M=[M(1:ind1(i)),regexprep(M(ind1(i)+1:ind2(i)-1),'(\s+)',' '),M(ind2(i):end)];
0362 end; end
0363 else error('The [ ... ] brakets are not properly paired')
0364 end
0365
96629ec1c2 Alis*0366 if isempty(recnum)
0367 recnum=1;
3323410f65 Alis*0368 end
a15d675b90 Alis*0369
52e6460920 Alis*0370 if isnan(nrecords)
a15d675b90 Alis*0371 % This is the old 'meta' method that used sequential access
0372
0373 A=allstr;
0374 % Open data file
0375 fid=fopen(dname,'r',ieee);
0376
0377 % Read record size in bytes
0378 recsz=fread(fid,1,'uint32');
0379 ldims=N(3,:)-N(2,:)+1;
0380 numels=prod(ldims);
0381
0382 rat=recsz/numels;
0383 if rat == 4
0384 A=fread(fid,numels,'real*4');
0385 elseif rat == 8
0386 A=fread(fid,numels,'real*8');
0387 else
0388 sprintf(' Implied size in meta-file = %d', numels )
0389 sprintf(' Record size in data-file = %d', recsz )
0390 error('Ratio between record size and size in meta-file inconsistent')
0391 end
0392
0393 erecsz=fread(fid,1,'uint32');
0394 if erecsz ~= recsz
0395 sprintf('WARNING: Record sizes at beginning and end of file are inconsistent')
0396 end
0397
0398 fclose(fid);
0399
0400 A=reshape(A,ldims);
0401
0402 else
0403 % This is the new MDS format that uses direct access
0404
0405 ldims=N(3,:)-N(2,:)+1;
96629ec1c2 Alis*0406 for r=1:size(recnum(:),1);
a15d675b90 Alis*0407 if dataprec == 'float32'
96629ec1c2 Alis*0408 A(:,r)=myrdda(dname,ldims,recnum(r),'real*4',ieee);
a15d675b90 Alis*0409 elseif dataprec == 'float64'
96629ec1c2 Alis*0410 A(:,r)=myrdda(dname,ldims,recnum(r),'real*8',ieee);
a15d675b90 Alis*0411 else
0412 error(['Unrecognized format in meta-file = ' format]);
0413 end
96629ec1c2 Alis*0414 end
0415
0416 A=reshape(A,[ldims size(recnum(:),1)]);
0417 if size(recnum(:),1)>1
0418 N(1,end+1)=size(recnum(:),1);
0419 N(2,end)=1;
0420 N(3,end)=size(recnum(:),1);
0421 end
a15d675b90 Alis*0422
0423 end
0424
0425 %-------------------------------------------------------------------------------
0426
0427 % result = RDDA( file, dim, irec [options] )
0428 %
0429 % This routine reads the irec'th record of shape 'dim' from the
0430 % direct-access binary file (float or double precision) 'file'.
0431 %
0432 % Required arguments:
0433 %
0434 % file - string - name of file to read from
0435 % dim - vector - dimensions of the file records and the resulting array
0436 % irec - integer - record number in file in which to write data
0437 %
0438 % Optional arguments (must appear after the required arguments):
0439 % prec - string - precision of storage in file. Default = 'real*8'.
0440 % ieee - string - IEEE bit-wise representation in file. Default = 'b'.
0441 %
0442 % 'prec' may take the values:
0443 % 'real*4' - floating point, 32 bits.
0444 % 'real*8' - floating point, 64 bits - the efault.
0445 %
0446 % 'ieee' may take values:
0447 % 'ieee-be' or 'b' - IEEE floating point with big-endian
0448 % byte ordering - the default
0449 % 'ieee-le' or 'l' - IEEE floating point with little-endian
0450 % byte ordering
0451 % 'native' or 'n' - local machine format
0452 % 'cray' or 'c' - Cray floating point with big-endian
0453 % byte ordering
0454 % 'ieee-le.l64' or 'a' - IEEE floating point with little-endian
0455 % byte ordering and 64 bit long data type
0456 % 'ieee-be.l64' or 's' - IEEE floating point with big-endian byte
0457 % ordering and 64 bit long data type.
0458 %
0459 % eg. T=rdda('t.data',[64 64 32],1);
0460 % T=rdda('t.data',[256],4,'real*4');
0461 % T=rdda('t.data',[128 64],2,'real*4','b');
0462 function [arr] = myrdda(file,N,k,varargin)
0463
0464 % Defaults
0465 WORDLENGTH=8;
0466 rtype='real*8';
0467 ieee='b';
0468
0469 % Check optional arguments
0470 args=char(varargin);
0471 while (size(args,1) > 0)
0472 if deblank(args(1,:)) == 'real*4'
0473 WORDLENGTH=4;
0474 rtype='real*4';
0475 elseif deblank(args(1,:)) == 'real*8'
0476 WORDLENGTH=8;
0477 rtype='real*8';
0478 elseif deblank(args(1,:)) == 'n' | deblank(args(1,:)) == 'native'
0479 ieee='n';
0480 elseif deblank(args(1,:)) == 'l' | deblank(args(1,:)) == 'ieee-le'
0481 ieee='l';
0482 elseif deblank(args(1,:)) == 'b' | deblank(args(1,:)) == 'ieee-be'
0483 ieee='b';
0484 elseif deblank(args(1,:)) == 'c' | deblank(args(1,:)) == 'cray'
0485 ieee='c';
0486 elseif deblank(args(1,:)) == 'a' | deblank(args(1,:)) == 'ieee-le.l64'
0487 ieee='a';
0488 elseif deblank(args(1,:)) == 's' | deblank(args(1,:)) == 'ieee-be.l64'
0489 ieee='s';
0490 else
0491 error(['Optional argument ' args(1,:) ' is unknown'])
0492 end
0493 args=args(2:end,:);
0494 end
0495
0496 nnn=prod(N);
0497
0498 [fid mess]=fopen(file,'r',ieee);
0499 if fid == -1
0500 error('Error while opening file:\n%s',mess)
0501 end
0502 st=fseek(fid,nnn*(k-1)*WORDLENGTH,'bof');
0503 if st ~= 0
0504 mess=ferror(fid);
0505 error('There was an error while positioning the file pointer:\n%s',mess)
0506 end
0507 [arr count]=fread(fid,nnn,rtype);
0508 if count ~= nnn
0509 error('Not enough data was available to be read: off EOF?')
0510 end
0511 st=fclose(fid);
96629ec1c2 Alis*0512 %arr=reshape(arr,N);
356a4fc521 Alis*0513
0514 %
37662e6918 Jean*0515 function [itrs] = scanforfiles(fname)
356a4fc521 Alis*0516
37662e6918 Jean*0517 itrs=[];
fe06077190 Alis*0518 allfiles=dir([fname '.*.001.001.meta']);
29a315c92f Alis*0519 if isempty(allfiles)
fe06077190 Alis*0520 allfiles=dir([fname '.*.meta']);
29a315c92f Alis*0521 ioff=0;
f4f3cf4445 Alis*0522 else
0523 ioff=8;
29a315c92f Alis*0524 end
356a4fc521 Alis*0525 for k=1:size(allfiles,1);
0526 hh=allfiles(k).name;
37662e6918 Jean*0527 itrs(k)=str2num( hh(end-14-ioff:end-5-ioff) );
356a4fc521 Alis*0528 end
37662e6918 Jean*0529 itrs=sort(itrs);
