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view on githubraw file Latest commit 7ae8fb32 on 2006-04-03 20:55:29 UTC
7ae8fb32b5 Andr*0001 #!/bin/csh
0002 #PBS -N APE6hr
0003 #PBS -l ncpus=6
0004 #PBS -l walltime=08:00:00
0005 #PBS -j oe
0006 #PBS -o /nobackup2/molod/APE6hr/input/stdout
0007 #PBS -q science@columbia2
0008 #PBS -V
0009
0010
0011 echo 'start'
0012 #----------------------------------------------
0013 set namPBS=APE6hr
0014 set runDir=/nobackup/molod/APE6hr/input
0015 set executable=/nobackup/molod/APE6hr/build/mitgcmuv
0016 #-------------------
0017 cd $runDir
0018
0019 #------
0020 limit stacksize unlimited
0021 module list
0022 module purge
0023 module load modules scsl.1.5.0.0 intel-comp.8.1.024 mpt.1.12.0.0
0024 #------
0025
0026 set its=`egrep 'nIter0' data | sed 's/ nIter0=//'| sed 's/,$//'`
0027
0028 #-------------------
0029
0030 mpirun -np 6 $executable
0031
0032 #-------------------
0033 #- prepare new submission :
0034 #-------------------
0035 echo 'Copying datetime file to datetime0 - time is: ' `cat datetime`
0036 cp datetime datetime0
0037
0038 set ite=`grep CHECKPOINT STDOUT.0000 | grep ckptA | sed 's/(PID.TID 0000.0001) %CHECKPOINT//' | sed 's/ //g' | sed 's/ckptA//'`
0039 echo 'Ending iteration number '$ite
0040 set nitPick = `/u/molod/bin/add0upto10c $ite`
0041 if ( -f pickup.ckptA.001.001.data ) then
0042 echo 'file:' pickup.ckptA.001.001.data 'exist'
0043 echo 'Rename pickup files'
0044 mv pickup.ckptA.001.001.data pickup.$nitPick.001.001.data
0045 mv pickup.ckptA.002.001.data pickup.$nitPick.002.001.data
0046 mv pickup.ckptA.003.001.data pickup.$nitPick.003.001.data
0047 mv pickup.ckptA.004.001.data pickup.$nitPick.004.001.data
0048 mv pickup.ckptA.005.001.data pickup.$nitPick.005.001.data
0049 mv pickup.ckptA.006.001.data pickup.$nitPick.006.001.data
0050 mv pickup_fizhi.ckptA.001.001.data pickup_fizhi.$nitPick.001.001.data
0051 mv pickup_fizhi.ckptA.002.001.data pickup_fizhi.$nitPick.002.001.data
0052 mv pickup_fizhi.ckptA.003.001.data pickup_fizhi.$nitPick.003.001.data
0053 mv pickup_fizhi.ckptA.004.001.data pickup_fizhi.$nitPick.004.001.data
0054 mv pickup_fizhi.ckptA.005.001.data pickup_fizhi.$nitPick.005.001.data
0055 mv pickup_fizhi.ckptA.006.001.data pickup_fizhi.$nitPick.006.001.data
0056 mv pickup_vegtiles.ckptA.001.001.data pickup_vegtiles.$nitPick.001.001.data
0057 mv pickup_vegtiles.ckptA.002.001.data pickup_vegtiles.$nitPick.002.001.data
0058 mv pickup_vegtiles.ckptA.003.001.data pickup_vegtiles.$nitPick.003.001.data
0059 mv pickup_vegtiles.ckptA.004.001.data pickup_vegtiles.$nitPick.004.001.data
0060 mv pickup_vegtiles.ckptA.005.001.data pickup_vegtiles.$nitPick.005.001.data
0061 mv pickup_vegtiles.ckptA.006.001.data pickup_vegtiles.$nitPick.006.001.data
0062 mv pickup_vegtiles.ckptA.007.001.data pickup_vegtiles.$nitPick.007.001.data
0063 echo 'Rename mnc directories'
0064 mkdir mnc_out_$ite
0065 mv mnc_out_200511*00*/* mnc_out_$ite
0066 mv STDOUT.0001 mnc_out_$ite
0067 /bin/rmdir mnc_out_200511*00*
0068 echo 'Change start iteration number for next run '
0069 sed "s/ nIter0=$its/ nIter0=$ite/" data > data.tmp
0070 mv data.tmp data
0071 sleep 5
0072 qsub $runDir/runScript.columbia
0073 else
0074 echo 'file:' pickup.ckptA.001.001.data 'do not exist !'
0075 endif
0076
0077 exit
